PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012308-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 277aa    MW: 30914.4 Da    PI: 8.0705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012308-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-1370116354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+++E+rRR+riNs + +Lr+l+P +      K++Ka+ L  +++++k+L
  NNU_012308-RA  70 KSHSQAEKRRRERINSHLTTLRKLIPRS-----DKMDKAALLASVIDHVKDL 116
                    79************************97.....7****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.53567116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1368122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.98E-1270119No hitNo description
Gene3DG3DSA:4.10.280.102.8E-1470119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-1170116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-1173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.6E-4173219No hitNo description
CDDcd048733.32E-5173219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MERCYLPALP EEACLLQYHA LNVGPFLLRW PPPSPLMPPH DSASFPVHGL PPSSLFMEEI  60
AQDRATAASK SHSQAEKRRR ERINSHLTTL RKLIPRSDKM DKAALLASVI DHVKDLKRKA  120
VEISQVFTIP KDVDEVIVDC DRSVEPTTTA TTTTATNDDD NNNSKNGFFI KASLSCDDRP  180
ELFTDLIQAL KGLRLTTVRA EMATMGGRII NVMVLCTKDC QEGVCLSSLK QSLKVVLNRI  240
ASTSMVSMNG RSSKRQRILL PSYYSESYSD HHEPSYV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264587.10.0PREDICTED: transcription factor bHLH51-like
TrEMBLD7T4M23e-85D7T4M2_VITVI; Putative uncharacterized protein
STRINGVIT_13s0067g01350.t017e-85(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.15e-35bHLH family protein